Jim Eubanks

Neuroscience Platform


Toronto Western Research Institute, Toronto Western Hospital, 399 Bathurst Street, Room Mac 13-421 , Toronto, Ontario Canada M5T 2S8
Research Interests
Investigating how epigenetic factors influence neuronal function.

Professional Memberships

  • Toronto Western Research Institute.
  • Professor, Division of Neurosurgery, Department of Surgery, University of Toronto
  • Division Head, Genetics and Development, Toronto Western Research Institute
  • Senior Scientist, Division of Genetics & Development, Toronto Western Research Institute

Research Synopsis

Research Divisions: Brain Research and Integrated Neurophysiology

Research Interests: Investigating how epigenetic factors influence neuronal function.

Keywords: Epigenetics, Rett Syndrome, Methyl DNA-Binding Factors, Behavior, Neurodegeneration.

Detailed Description:
We are interested in determining how epigenetic factors regulate the development, the maturation, and the overall function of the central nervous system. The importance of epigenetics to these events has been under-appreciated, but the discovery that the pediatric neurological disorder Rett syndrome is caused by mutations of the epigenetic factor MeCP2 has highlighted the importance of this system in brain development. The following are three investigative themes ongoing in our group.

Correcting the Rett Phenotype. Rett syndrome is a disorder in which synaptic development stalls. One key issue is whether this condition is irremediable, or could be corrected by the restoration of MeCP2 function to the mutant neurons. We have generated a transgenic mouse in which MeCP2 can be conditionally induced within the brain, and will use this mouse to test whether the reintroduction of normal MeCP2 improves the Rett-like condition of the mutant mice. If successful, this would provide proof of principle that Rett syndrome is amenable to gene therapy treatment. In related studies, we have shown that synaptic plasticity is impaired in the MeCP2-deficient hippocampus, and that this impairment correlates with diminished expression levels of the NR2A subunit of the NMDA receptor. This subunit is critical for synaptic maturation, and for the genesis of hippocampal synaptic plasticity. Using a series of pharmacological and NR2A reintroduction strategies, we will determine whether enhancing NR2A function improves synaptic maturation, synaptic plasticity, and/or the impaired behavior of MeCP2-deficient mouse.Epigenetics and Mental Retardation. By coincidence, our transgenic mice turn out to be an animal model for a recently described mental retardation syndrome boys that results from a duplication of the MeCP2 gene. Little is known about how the over-representation of MeCP2 affects neuronal function. Using our transgenic line, we will identify molecular changes contributing to this novel condition, and then attempt to develop strategies to correct the phenotype.Epigeneticss and Neurodegeneration. Inhibiting of histone deacetylases protects neurons from several forms of insult-induced degeneration. The critical complexes at which these agents act remain unknown. We believe methyl DNA-binding factor-associated histone deacetylases are involved, and have determined that neurons lacking a specific methyl DNA binding factor are less sensitive to some insults. We are now identifying the mechanism for the diminished sensitivity, determining whether the brain of a mouse lacking this factor is less sensitive in vivo. If successful, we will then attempt to develop an intervention strategy with clinical applicability.


Cell and tissue culture: Hippocampal cells, neurons.

Procedures: Adenovirus, behavioral tests, EEG, gene expression analysis, immunohistochemistry, immunocytochemistry, in-vivo electrophysiology, in-vivo recording of local field potentials, qRT-PCR, RT-PCR, siRNA, stereotaxic brain surgery, western blot.


Amplifier, analytical balances, benchtop centrifuge, blotting apparatus, confocal microscope, culture hood, culture incubators, cryostat, deconvolution fluorescence microscope, digital microscope, dissecting microscope, electrophysiology rig, fluorescence microscope, gel apparatus, low- and high-speed centrifuge, low and ultralow freezers, plate reader, pneumatic picopump, ProBlot hybridization oven, real-time/thermocycler, stirrer/hot plate, vibratome, water baths.


Elena Sidorova
Natalya Shulyakova
Min Lang
Robert Wither


Within the Department of Physiology:
Mike Tymianski
Mike Salter
Peter Carlen
Philippe Monnier
Linda Mills

Outside the Department of Physiology:
Liang Zhang, Neuroscience, Toronto Western
Joanne Nash, UT Scarborough
Alan Kozikowski, University of Illinois, Chicago
Lucas Pozzo-Miller, University of Alabama, Birmingham
Ellis James, Hospital for Sick Children, Toronto

Committee member/officer of national/international scientific organizations
Ontario Rett Syndrome Association (Scientific Advisory Panel Member)
University of Toronto Epilepsy Research Program (Advisory Board Member)
International Rett Syndrome Foundation (Scientific Advisory Board Member)

Recent Publications

Min Lang, Robert G. Wither, Jonathan M. Brotchie, Chiping Wu, Liang Zhang, and James H. Eubanks. Selective Preservation of MeCP2 In Catecholaminergic Cells Is Sufficient To Improve the Behavioral Phenotype of Male and Female Mecp2-Deficient Mice. Human Molecular Genetics 22:358-71. (2013)

Robert G. Wither, Min Lang, Liang Zhang, and James H. Eubanks. Regional MeCP2 Expression Levels In The Female MeCP2-Deficient Mouse Brain Correlate With Specific Behavioral Impairments. Experimental Neurology 22:358-71. (2013)

David M. Katz, JoAnne E. Berger-Sweeney, James H. Eubanks, Monica J. Justice, Jeffery L. Neul, Lucas Pozzo-Miller, Mary E. Blue, Diana Christian, Jacqueline N. Crawley, Maurizio Giustetto, Jacky Guy, C. James Howell, Mirium Kron, Sacha B. Nelson, Rodney C. Samaco, Laura R. Schaevitz, Coryse St Hillaire-Clarke, Juan L. Young, Huda Y. Zoghbi, and Laura A. Mamounas. Preclinical research in Rett syndrome: setting the foundation for translational success. Disease Models & Mechanisms 5:733-45. (2012)

Diane M. Cockburn, Jason Charish, Nardos G. Tassew, James H. Eubanks, Rod Bremner, Paolo Macchi, Philippe P. Monnier. The double-stranded RNA-binding protein Staufen 2 regulates eye size. Molecular and Cellular Neuroscience 51:101-111. (2012)

Robert G. Wither, Sinisa Colic, Chiping Wu, Berj L. Bardakjian, Liang Zhang, and James H. Eubanks. Daily Rhythmic Behavior and Thermoregulatory Patterns Are Disrupted In Female MeCP2-Deficient Mice. PLoS-One e35396 (2012)

Natalie Farra, Wen-Bo Zhang, Amy P. Wong, Peter Pasceri, James H. Eubanks, Michael W. Salter, and James Ellis. Rett syndrome induced pluripotent stem cell-derived neurons reveal novel dysfunctional electrophysiology. Molecular Psychiatry 17:1261-71. (2012)

Wei Xie, Cathy L Barr, Audrey Kim, Feng Yue, Ah Young Lee, James Eubanks, Emma L Dempster and Bing Ren Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome. Cell 148:816-831 (2012)